Issue 5534: Recommend adding optional association from Compound to DatabaseEntry (gene-expression-ftf)
Source: Rosetta Biosoftware Business Unit (Mr. Michael D Miller, nobody)
Nature: Uncategorized Issue
Severity: 
Summary: Recommend adding optional association from Compound to DatabaseEntry 
called 'ExternalLIMS' to reference an external LIMS system entry.


Resolution of the issue would change:
MAGE-OM and the generated MAGE.xmi
MAGE-ML.dtd
3.1.10, "BioMaterial" of the documentation

Resolution: see below
Revised Text: 2.1.10, "BioMaterial" of the documentation

Figure 2-11 will be updated

Documentation for Compound will add a description of the new association.

Currently:

" Associations:

\bmerckIndex\b : OntologyEntry (0..1)

The Merck Index of this Compound.

\bcomponentCompounds\b : CompoundMeasurement (0..n)

The Compounds and their amounts used to 

create this Compound."

Becomes:

" Associations:

\bmerckIndex\b : OntologyEntry (0..1)

The Merck Index of this Compound.

\bcomponentCompounds\b : CompoundMeasurement (0..n)

The Compounds and their amounts used to 

create this Compound.

\bexternalLIMS\b : DatabaseEntry (0..1)

Reference to an entry in an external LIMS 

data source."

(where \b...\b indicates bold)
 
 
  MAGE-OM and the generated MAGE.xmi are updated, adding the new ExternalLIMS association.
 
 
  MAGE-ML.dtd

Comment for Compound is updated

Currently:

" Associations

Inherites associations from base class Identifiable.

merckIndex: The Merck Index of this Compound.

componentCompounds: The Compounds and their amounts used to 

create this Compound."

Becomes:

" Associations

Inherites associations from base class Identifiable.

merckIndex: The Merck Index of this Compound.

componentCompounds: The Compounds and their amounts used to 

create this Compound.

externalLIMS: Reference to an entry in an external LIMS data 

source."

Element declaration for Compound is updated

Currently:

"<!ELEMENT Compound ((%Identifiable_content;),

MerckIndex_assn?,

ComponentCompounds_assnlist?) >"

Becomes:

"<!ELEMENT Compound ((%Identifiable_content;),

MerckIndex_assn?,

ComponentCompounds_assnlist?,

ExternalLIMS_assn?) >"
 

Actions taken:
July 20, 2002: received issue
December 11, 2002: closed issue
Discussion: 
Adding optional association from Compound to DatabaseEntry called 'ExternalLIMS' will allow referencing an external LIMS system entry.

End of Annotations:=====
Recommend adding optional association from Compound to DatabaseEntry 
called 'ExternalLIMS' to reference an external LIMS system entry.


Resolution of the issue would change:
MAGE-OM and the generated MAGE.xmi
MAGE-ML.dtd
3.1.10, "BioMaterial" of the documentation


(MAGE ISSUE 120)