Issue 5535: Make association from DerivedBioAssay to BioAssayMap navigable both ways (gene-expression-ftf)
Source: Rosetta Biosoftware Business Unit (Mr. Michael D Miller, nobody)
Nature: Uncategorized Issue
Severity: 
Summary: Recommend making association from DerivedBioAssay to BioAssayMap 
navigable both ways.  It currently is only navigable from BioAssayMap
to DerivedBioAssay.  This will make it easier to find what BioAssays
were used to producea BioAssay.  The association end should be named
derivedBioAssayMap


Resolution of the issue would change:
MAGE-OM and the generated MAGE.xmi
MAGE-ML.dtd
3.1.12, "BioAssayData" of the documentation
Resolution: see below
Revised Text: 2.1.11, "BioAssay" of the documentation

Update Figure 2-12

Update documentation for DerivedBioAssay, add description of new association.

Currently:

"\bderivedBioAssayData\b : DerivedBioAssayData (0..n)

The data associated with the 

DerivedBioAssay."

Becomes:

"\bderivedBioAssayData\b : DerivedBioAssayData (0..n)

The data associated with the 

DerivedBioAssay.

\bderivedBioAssayMap\b : BioAssayMap (0..n)

The DerivedBioAssay that is produced by 

the sources of the BioAssayMap."

(where \b...\b indicates bold)

2.1.12, "BioAssayData" of the documentation

Update Figure 2-14 
 
 
 MAGE-OM and the generated MAGE.xmi are updated, changing the Target association between DerivedBioAssay and BioAssayMap.
 
 
  The comment for DerivedBioAssay is updated

Currently:

" derivedBioAssayData: The data associated with the 

DerivedBioAssay."

Becomes:

" derivedBioAssayData: The data associated with the 

DerivedBioAssay.

derivedBioAssayMap: The DerivedBioAssay that is produced by the 

sources of the BioAssayMap."

The Element declaration for DerivedBioAssay is updated

Currently:

"<!ELEMENT DerivedBioAssay ((%BioAssay_content;),

Type_assn?,

DerivedBioAssayData_assnreflist?) >"

Becomes:

"<!ELEMENT DerivedBioAssay ((%BioAssay_content;),

Type_assn?,

DerivedBioAssayData_assnreflist?,

DerivedBioAssayMap_assnreflist?) >"

Element and Attlist declarations for BioAssayMap is updated

Currently:

<!ELEMENT BioAssayMaps_assnreflist (BioAssayMap_ref+) >

Becomes:

<!ELEMENT BioAssayMaps_assnreflist (BioAssayMap_ref+) >

<!ELEMENT DerivedBioAssayMap_assnreflist (BioAssayMap_ref+) >
 

Actions taken:
July 20, 2002: received issue
December 11, 2002: closed issue
Discussion: 
This will make it easier to find what BioAssays were used to produce a BioAssay. The association end should be named derivedBioAssayMap

End of Annotations:=====
Recommend making association from DerivedBioAssay to BioAssayMap 
navigable both ways.  It currently is only navigable from BioAssayMap
to DerivedBioAssay.  This will make it easier to find what BioAssays
were used to producea BioAssay.  The association end should be named
derivedBioAssayMap


Resolution of the issue would change:
MAGE-OM and the generated MAGE.xmi
MAGE-ML.dtd
3.1.12, "BioAssayData" of the documentation


(MAGE Issue 14.5)