Issue 8805: Added classes for describing bibliographic references (snp-ftf) Source: Japan Biological Informatics Consortium (Mr. Martin Senger, martin.senger@gmail.com) Nature: Uncategorized Issue Severity: Summary: The model follows closely the OMG Bibliographic Query Service data model. Only differences are the way bibref subject descriptors are handles (giving more flexibility to mix different vocabularies) and addition of boolean 'et_at' attribute to Person to indicate that the list of, for example, authors is not complete. - All the added classes except Bibref_subject and Bibref_description inherit from Identifiable and can have additional properties added to them using Annotation and Db_xref. These two classes are mere groupings of attributes to Bibliographic_reference and can not exist independently. Resolution: Revised Text: Discussion: It is not possible to add BQS classes here just by reference because in BQS they are expressed normatively as CORBA objects. Therefore, it is needed to add them here by copying. The copying includes all classes expressed in the illustrative UML part of BQS, except differences mentioned in the summary above. Resolution: Proposed solution: · Apply the change into the UML diagram of the PIM model (make a new figure) · Apply the change into the XMI file created from the UML diagram (update the accompanying file by a new omgsnp-xmi12.xml file) · Apply the change in the section "3.2 Model classes, attributes and associations (details)" (re-generate the whole section from the XMI) Disposition: Resolved Actions taken: May 20, 2005: received issue November 1, 2005: closed issue Discussion: The "Proposed resolution" for all of them is the following: ----------------------------------------------------------- * apply the change into the UML diagram of the PIM model (make a new figure) * apply the change into the XMI file created from the UML diagram (update the accompanied file) * apply the change in the section "3.2 Model classes, attributes and associations (details)" (re-generate the whole section from the XMI) End of Annotations:===== te: Fri, 20 May 2005 11:04:54 +0100 (BST) From: Martin Senger To: Juergen Boldt cc: issues@omg.org, Subject: remaining issues for the SNP FTF X-EBI-Information: This email is scanned using www.mailscanner.info. X-EBI: Found to be clean X-EBI-SpamCheck: not spam, SpamAssassin (score=0, required 5) The following changes were suggested to the SNP PIM model (and consequently to the XML Schema - a PSM - defining the PML data exchange format. Because all of these changes will be resolved by the same mechanism I am putting them all in one issue (but Juergen may choose to separate them into individual issues with the same "proposed resolution" section). The "Proposed resolution" for all of them is the following: ----------------------------------------------------------- * apply the change into the UML diagram of the PIM model (make a new figure) * apply the change into the XMI file created from the UML diagram (update the accompanied file) * apply the change in the section "3.2 Model classes, attributes and associations (details)" (re-generate the whole section from the XMI) The changes are here: - Added classes for describing bibliographic references - The model follows closely the OMG Bibliographic Query Service data model. Only differences are the way bibref subject descriptors are handles (giving more flexibility to mix different vocabularies) and addition of boolean 'et_at' attribute to Person to indicate that the list of, for example, authors is not complete. - All the added classes except Bibref_subject and Bibref_description inherit from Identifiable and can have additional properties added to them using Annotation and Db_xref. These two classes are mere groupings of attributes to Bibliographic_reference and can not exist independently. Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger@EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger