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Last Updated Tuesday, July 17, 2001
Last Updated Tuesday, July 17, 2001
| Objects in Bio- & Chem-Informatics 2001 (OiBC-2001) |
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Click here to download a ZIP file (1.2 MB; unpacks to 4.2 MB) containing all the conference abstracts.
| Abstract | Slides | BioInformatics Software Resource (BISR), Building the Technical Infrastructure for Bioinformatics
T. N. Bhat, Michael Tung, and Gary Gilliland. Biotechnology Division, National Institute of Standards and Technology |
| Abstract | Slides | Piper: Peer-to-Peer Distribution of Scientific Programs and Data-Flow
J.W. Bizzaro, Jarl van Katwijk, Jean-Marc Valin, Brad Chapman, Dominic Letourneau, Gary
Van Domselaar and Deanne Taylor. Department of Chemistry, University of Massachusetts Lowell |
| Abstract | Slides | Developing a Flexible J2EE Based Architecture for the Querying, Retrieval and Visualisation of Gene Expression Information
John Boyle, Life Science Informatics Solutions Ltd |
| Abstract | Slides | The Usability Factor - The Key to Acceptance
Jeroen Coppieters1, Deborah Garcia1, Tad Harrison2, Simon White1. 1Synomics, 2Wyeth Ayerst Research |
| Abstract | Slides | The CCPN project - a common data model for macromolecular NMR spectroscopy
Rasmus H. Fogh1, John Ionides2, Wayne Boucher3, Ernest Laue4.
1Department of Biochemistry, University of Cambridge,
2EMBL European Bioinformatics Institute,
3Azara Plc,
4University of Cambridge |
| Abstract | Slides | OpenMMS: An Ontology Driven Architecture for Macromolecular Structure
Douglas S. Greer1, John Westbrook2, Philip Bourne1. 1University of California, San Diego, 2Rutgers University |
| Abstract | Slides | Searching and Serving XML Objects
David Hansen, Marco Donizelli, Jesko Hars and Thure Etzold. LION Bioscience |
| Abstract | Slides | Use of Java and XML in an Architecture for Genomic Annotation Visualization and Exchange (AGAVE)
Kyle Hart, Brian King, Ronghua Chen, Archie Russell, Edward Kiruluta. Doubletwist |
| Abstract | The New Biology and Terascale Computing
Grant S. Heffelfinger. Sandia National Laboratories | |
| Abstract | Slides | ChemSymphony Pro - Advanced components for life sciences
Lewis Jardine and Anatoli Krassavine. NetGenics UK |
| Abstract | Slides | Ensembl: an automated system for eukaryotic genome annotation
A. Kasprzyk1, A. Stabenau1, M. Clamp2, E. Mongin1, E. Stupka1, E. Birney1. 1European Bioinformatics Institute, 2Sanger Centre |
| Abstract | Slides | Distributed and Parallel Solution of Complex Biological Models
G. Scott Lett and Haoyu Yu. Physiome Sciences, Inc. |
| Abstract | Slides | The OMG Life Sciences Research DTF: A Progress Report
Scott Markel1, Karl Konnerth2, David Benton3. 1NetGenics, 2Incyte Genomics, 3GlaxoSmithKline |
| Abstract | Slides | A Marketplace for Ontologies and Ontology-Based Tools and Applications in the Life Sciences
Robin McEntire1, Carole Goble2, Robert Stevens2, Eric Neumann3, Paula Matuszek1, Terence Critchlow4, Peter Tarczy-Hornoch5.
1GlaxoSmithKline, 2University of Manchester, 3Beyond Genomics, 4Lawrence Livermore National Lab, 5University of Washington |
| Panel Discussion: Funding R&D in Bio- & Chem-Informatics Richard Morris, NIAID, NIH Kimberly Rasar, DOE Sylvia Spengler, NSF | ||
| Abstract | Slides | Integration of Microarray Data With and Without Standards
Jack Pollard and Nat Goodman. 3rd Millennium |
| Abstract | Slides | Genomic Knowledge Platform: an Object-Oriented Architecture Integrating
Information Across Sequence, Expression, Genetics, and Other Biological
Data Sources
Frank Russo, Greg Pelts, Ed Evans, Robert Shank, and Lee Grover. Incyte Genomics |
| Abstract | Slides | GeneCardsTM 3.0: An Object-Oriented Approach
Marilyn Safran2, Shai Shen-Orr3, Irina Solomon2, Inga Peter1,2, Vered Chalifa-Caspi2, and Doron Lancet1,4.
1Departments of Molecular Genetics, 2Biological Services (Bioinformatics Unit), 3Molecular Cell Biology, and the 4Crown Human Genome Center, the Weizmann Institute of Science |
| Abstract | Slides | Re-usable components for structural bioinformatics
Michel F. Sanner. Molecular Graphics Laboratory, Scripps Research Institute |
| Slides | Future Trends in Accessing Public BioInformation Resources - BioCorba, OpenBSA and Bio-Grid Technologies
Martin Senger. European Bioinformatics Institute | |
| Slides | Return on Investment of an Object-Based Development
Randy Spratt. McKesson HBOC | |
| Abstract | Slides | Design of E-Cell 3: Object-based Cell Simulation Environment
Kouichi Takahashi1,2, Takeshi Sakurada1,2, Masayuki Okayama1,3,
Motohiro Yoneda1,3, Yusuke Saito1,2,
Masaru Tomita1,3. 1Institute for Advanced Biosciences,
2Graduate School of Media and Governance,
3Department of Environmental Information,
Keio University |
| Abstract | Slides | Model Driven Architecture: Architecting the Future at OMG
Andrew Watson. Object Management Group |
| Abstract | A Control and Expression Framework for Data Analysis in Bioinformatics
Val K. Bykoski. UMass/Lowell and Virtek, Inc | |
| Abstract | Finding the in "Information" in Bioinformatics?
Joe Peden. Thermo LabSystems | |
| Abstract | Poster | Logical Aspect of Bioinformatics
Sergey Petrov. Biogen, Inc. |
| Abstract | Ontology Issues in Clinical Genomics
Barry Robson. IBM Research | |
| Abstract | GeneCardsTM 3.0: An Object-Oriented Approach
Marilyn Safran2, Shai Shen-Orr3, Irina Solomon2, Inga Peter1,2, Vered Chalifa-Caspi2, and Doron Lancet1,4.
1Departments of Molecular Genetics, 2Biological Services (Bioinformatics Unit), 3Molecular Cell Biology, and the 4Crown Human Genome Center, the Weizmann Institute of Science | |
| Abstract | PhyloSource: An Interactive Phylogenetic Relationship Repository
Dong-Guk Shin1, John Blius1, Ravi Nori1, Hsin-Wei Wang1, Pinglei Zhou1, and J. Peter Gogarten2. 1Computer Science and Engineering, 2Molecular and Cell Biology, University of Connecticut | |
| Abstract | J2EE Architecture for Informatics Support of Genomic Sequencing
Roxanne Tapia, Mark Mundt, Judith Cohn. DOE Joint Genome Institute, Center for Human Genome Studies, Bioscience Division, Los Alamos National Laboratory | |
| Abstract | A Lisp-based object-oriented database and analysis environment for
gene expression data
Ronald Taylor1, Sonia Leach1, Lawrence Hunter1, Imran Shah2.
1Dept of Pharmacology, 2Dept of Preventive Medicine and Biometrics,
University of Colorado | |
| Abstract | Poster | Creating a new set of tools for structure based drug design
J.L. van der Plas and J.P. Abrahams. Crystallics |
| Abstract | Functional integration between three bioinformatics database applications using HTTP-encoded commands and NetTree, a URL-based dynamic addressing applet
Thad Welch, Bharath Lakshmanan, Artem Lipatov, Aaron Kitzmiller. Bioinformatics Department, Wyeth-Ayerst Research | |
| Abstract | Managing Efficient, Scalable Virtual Screening In a Distributed Computational System
Barry Wythoff and Ben Alexander. Computational Design, ArQule |