(object Petal
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			documentation 	"The potentially ambiguous common identifier."
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			documentation 	"The name of the key."
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		documentation 	"Allows specification of name/value pairs.  Meant to primarily help in-house, pipeline processing of instances by providing a place for values that aren't part of the specification proper."
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	    (object Class_Category "ArrayDesign"
		quid       	"3AC65A640099"
		documentation 	
|Describes a microarray design that can be printed and then, in the case of gene expression,  hybridized.  An array design consists of several features (also called spots) in which reporter sequences are placed.  Many features may have the same reporter replicated and a reporter may be specified in one or more array designs.  
|
|The nature of the reporter's biosequence placed on a spot will depend on the technology.  Two well-known technologies differ significantly-spotter arrays draw material from a well and place a spot on the array whereas in situ oligo arrays are created through the synthesis of many, short (~20-100mer) nucleotide sequences onto the features.
|
|Reporters can be grouped together into CompositeSequences, typically representing a gene or one or more splice variants in gene expression experiments. 
|
|There are then two distinct ways that DesignElements are grouped.  The one described in the ArrayDesign package by FeatureGroup, ReporterGroup and CompositeGroup is by technology type, that is, one might want to segregate the controls to a Group and all the non-controls to another.   Or if PCR Product and Oligos are both used on an array they would likely be in different groups.  The grouping described in the DesignElement package by the mappings relates the Features to the Reporter, the Reporters to CompositeSequence, and at higher levels, CompositeSequences to CompositeSequence.
|
		
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			documentation 	"Describes the design of an gene expression layout.  In some cases this might be virtual and, for instance, represent the output from analysis software at the composite level without reporters or features."
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			    (object Inheritance_Relationship
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				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
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				quidu      	"3B0D2BB103A2"))
			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "version"
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				quid       	"3ADDDF9C0225"
				documentation 	"The version of this design."
				type       	"String")
			    (object ClassAttribute "numberOfFeatures"
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				documentation 	"The number of features for this array"
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			documentation 	"A design that is expected to be used to manufacture physical arrays."
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			documentation 	"Specifies the layout of features in a rectangular grid."
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				documentation 	"The number of features from left to right."
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				documentation 	"The number of features from top to bottom of the grid."
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				documentation 	"Spacing between the rows."
				type       	"float")
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				quid       	"3ADB98CC0159"
				documentation 	"Spacing between the columns."
				type       	"float"))
			module     	"Component View::ArrayDesign"
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		    (object Class "ZoneGroup"
			quid       	"3ADB960F0007"
			documentation 	"Specifies a repeating area on an array.  This is useful for printing when the same pattern is repeated in a regular fashion."
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			    (object ClassAttribute "spacingsBetweenZonesX"
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				quid       	"3ADB9903018B"
				documentation 	"Spacing between zones, if applicable."
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			    (object ClassAttribute "spacingsBetweenZonesY"
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				documentation 	"Spacing between zones, if applicable."
				type       	"float")
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				quid       	"3B9E4954019B"
				documentation 	"The number of zones on the x-axis."
				type       	"int")
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				quid       	"3B9E496B02CB"
				documentation 	"The number of zones on the y-axis."
				type       	"int"))
			module     	"Component View::ArrayDesign"
			quidu      	"3C33387C036A")
		    (object Class "Zone"
			quid       	"3ADB96150381"
			documentation 	"Specifies the location of a zone on an array."
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				quid       	"3B9E49D20192"
				documentation 	"row position in the ZoneGroup"
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				documentation 	"column position in the ZoneGroup."
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			    (object ClassAttribute "upperLeftX"
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				documentation 	"Boundary vertical upper left position relative to (0,0)."
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				documentation 	"Boundary horizontal upper left position relative to (0,0)."
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				documentation 	"Boundary vertical lower right position relative to (0,0)."
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				quid       	"3ADB995801AB"
				documentation 	"Boundary horizontal lower right position relative to (0,0)."
				type       	"float"))
			module     	"Component View::ArrayDesign"
			quidu      	"3C33387C036A")
		    (object Class "ReporterGroup"
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			quid       	"3AC7B4B300BE"
			documentation 	
|Allows specification of the type of Reporter Design Element.
|
			
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				quid       	"3AC7B52401ED"
				supplier   	"Logical View::ArrayDesign::DesignElementGroup"
				quidu      	"3B004F69014D"))
			module     	"Component View::ArrayDesign"
			quidu      	"3C33387C036A")
		    (object Class "FeatureGroup"
			quid       	"3AC6625D03D3"
			documentation 	"A collection of like features."
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				supplier   	"Logical View::ArrayDesign::DesignElementGroup"
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			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "featureWidth"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
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				quid       	"3B6DD7760232"
				documentation 	"The width of the feature."
				type       	"float")
			    (object ClassAttribute "featureLength"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
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				quid       	"3B6DD78103AA"
				documentation 	"The length of the feature."
				type       	"float")
			    (object ClassAttribute "featureHeight"
				attributes 	(list Attribute_Set
				    (object Attribute
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				quid       	"3B6DD78D031B"
				documentation 	"The height of the feature."
				type       	"float"))
			module     	"Component View::ArrayDesign"
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		    (object Class "DesignElementGroup"
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			    (object Attribute
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			    (object Attribute
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			quid       	"3B004F69014D"
			documentation 	"The DesignElementGroup holds information on either features, reporters, or compositeSequences, particularly that information that is common between all of the DesignElements contained."
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			quidu      	"3C33387C036A"
			abstract   	TRUE)
		    (object Class "CompositeGroup"
			quid       	"3AC7B5320035"
			documentation 	"Allows specification of the type of Composite Design Element."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3AC7B53E00AA"
				supplier   	"Logical View::ArrayDesign::DesignElementGroup"
				quidu      	"3B004F69014D"))
			module     	"Component View::ArrayDesign"
			quidu      	"3C33387C036A")
		    (object Association "Design"
			quid       	"3AC7ADC3004C"
			documentation 	"The association of a physical array with its array design."
			roles      	(list role_list
			    (object Role "arrayDesign"
				quid       	"3AC7ADC40152"
				label      	"arrayDesign"
				supplier   	"Logical View::ArrayDesign::ArrayDesign"
				quidu      	"3AC65F20001A"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$4"
				quid       	"3AC7ADC40166"
				supplier   	"Logical View::Array::Array"
				quidu      	"3AC663AA00BB"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Arrays2ArrayGroup"
			quid       	"3AC7AF910263"
			documentation 	"Association between an ArrayGroup and its Arrays, typically the ArrayGroup will represent a slide and the Arrays will be the manufactured so that they may be hybridized separately on that slide. "
			roles      	(list role_list
			    (object Role "arrays"
				quid       	"3AC7AF9301C6"
				label      	"arrays"
				supplier   	"Logical View::Array::Array"
				quidu      	"3AC663AA00BB"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "arrayGroup"
				quid       	"3AC7AF9301D0"
				label      	"arrayGroup"
				supplier   	"Logical View::Array::ArrayGroup"
				quidu      	"3AC6625002E4"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 3"
				Containment 	"By Reference"
				is_navigable 	TRUE)))
		    (object Association "ProtocolApplications"
			quid       	"3ADB952F007D"
			documentation 	"Describes the application of any protocols, such as the methodology used to pick oligos, in the design of the array."
			roles      	(list role_list
			    (object Role "protocolApplications"
				quid       	"3ADB9530013D"
				label      	"protocolApplications"
				supplier   	"Logical View::Protocol::ProtocolApplication"
				quidu      	"3AC6685300B6"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$5"
				quid       	"3ADB95300151"
				supplier   	"Logical View::ArrayDesign::ArrayDesign"
				quidu      	"3AC65F20001A"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Groups"
			quid       	"3ADB98E802D6"
			documentation 	"In the case where the array design is specified by one or more zones, allows specifying where those zones are located."
			roles      	(list role_list
			    (object Role "zoneGroups"
				quid       	"3ADB98E902C4"
				label      	"zoneGroups"
				supplier   	"Logical View::ArrayDesign::ZoneGroup"
				quidu      	"3ADB960F0007"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$6"
				quid       	"3ADB98E902CE"
				supplier   	"Logical View::ArrayDesign::PhysicalArrayDesign"
				quidu      	"3AC7A9E102BA"
				is_aggregate 	TRUE)))
		    (object Association "Locations"
			quid       	"3ADB9AF90074"
			documentation 	"Describes the location of different zones within the array design."
			roles      	(list role_list
			    (object Role "zoneLocations"
				quid       	"3ADB9AF90395"
				label      	"zoneLocations"
				supplier   	"Logical View::ArrayDesign::Zone"
				quidu      	"3ADB96150381"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$7"
				quid       	"3ADB9AF9039F"
				supplier   	"Logical View::ArrayDesign::ZoneGroup"
				quidu      	"3ADB960F0007"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Layouts"
			quid       	"3ADB9B26017D"
			documentation 	"Describes the rectangular layout of features in the array design. "
			roles      	(list role_list
			    (object Role "zoneLayout"
				quid       	"3ADB9B270084"
				label      	"zoneLayout"
				supplier   	"Logical View::ArrayDesign::ZoneLayout"
				quidu      	"3ADB95F502C7"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$8"
				quid       	"3ADB9B27008E"
				supplier   	"Logical View::ArrayDesign::ZoneGroup"
				quidu      	"3ADB960F0007"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Position"
			quid       	"3ADB9E4C023A"
			documentation 	"The position of the feature on the array, relative to the top, left corner."
			roles      	(list role_list
			    (object Role "position"
				quid       	"3ADB9E4D0250"
				label      	"position"
				supplier   	"Logical View::DesignElement::Position"
				quidu      	"3ADB97EE02B9"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$9"
				quid       	"3ADB9E4D025A"
				supplier   	"Logical View::DesignElement::Feature"
				quidu      	"3AC65F4802FC"
				client_cardinality 	(value cardinality "1")
				Containment 	"By Reference"
				is_aggregate 	TRUE)))
		    (object Association "DistanceUnit"
			quid       	"3ADB9FD70170"
			documentation 	"The units of the x, y positions."
			roles      	(list role_list
			    (object Role "distanceUnit"
				quid       	"3ADB9FD80031"
				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
				quidu      	"3B0B7F3A00BD"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$10"
				quid       	"3ADB9FD8004F"
				supplier   	"Logical View::DesignElement::Position"
				quidu      	"3ADB97EE02B9"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "DistanceUnit"
			quid       	"3ADC75A500E6"
			documentation 	"Unit of the ZoneLayout attributes."
			roles      	(list role_list
			    (object Role "distanceUnit"
				quid       	"3ADC75A70252"
				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
				quidu      	"3B0B7F3A00BD"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$11"
				quid       	"3ADC75A70266"
				supplier   	"Logical View::ArrayDesign::ZoneLayout"
				quidu      	"3ADB95F502C7"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "DistanceUnit"
			quid       	"3ADC75DA0056"
			documentation 	"Unit for the ZoneGroup attributes."
			roles      	(list role_list
			    (object Role "distanceUnit"
				quid       	"3ADC75DC03A3"
				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
				quidu      	"3B0B7F3A00BD"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$12"
				quid       	"3ADC75DC03AD"
				supplier   	"Logical View::ArrayDesign::ZoneGroup"
				quidu      	"3ADB960F0007"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "CompositeGroups"
			quid       	"3B00509100C7"
			documentation 	"The grouping of like CompositeSequence together.  If more than one technology type occurs on the array, such as the mixing of Cloned BioMaterial and Oligos, then there would be multiple CompositeGroups to segregate the technology types."
			roles      	(list role_list
			    (object Role "compositeGroups"
				quid       	"3B005092030D"
				label      	"compositeGroups"
				supplier   	"Logical View::ArrayDesign::CompositeGroup"
				quidu      	"3AC7B5320035"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 4"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$13"
				quid       	"3B0050920317"
				supplier   	"Logical View::ArrayDesign::ArrayDesign"
				quidu      	"3AC65F20001A"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "DesignProviders"
			quid       	"3ADB947901B2"
			documentation 	"The primary contact for information on the array design"
			roles      	(list role_list
			    (object Role "designProviders"
				quid       	"3ADB947A0177"
				label      	"designProviders"
				supplier   	"Logical View::AuditAndSecurity::Contact"
				quidu      	"3B1BFD0E00A0"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 5"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$14"
				quid       	"3ADB947A0182"
				supplier   	"Logical View::ArrayDesign::ArrayDesign"
				quidu      	"3AC65F20001A"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Species"
			quid       	"3B0D1F430111"
			documentation 	"The organism from which the biosequences of this group are from."
			roles      	(list role_list
			    (object Role "species"
				quid       	"3B0D1F4302DE"
				label      	"species"
				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$15"
				quid       	"3B0D1F4302E8"
				supplier   	"Logical View::ArrayDesign::DesignElementGroup"
				quidu      	"3B004F69014D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "ImmobilizedCharacteristics"
			quid       	"3B0D323B03A9"
			documentation 	"The sequence annotation on the BioMaterial this reporter represents.  Typically the sequences will be an Oligo Sequence, Clone or PCR Primer."
			roles      	(list role_list
			    (object Role "immobilizedCharacteristics"
				quid       	"3B0D323D03C0"
				label      	"immobilizedCharacteristics"
				supplier   	"Logical View::BioSequence::BioSequence"
				quidu      	"3B1BFF5B01BF"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$16"
				quid       	"3B0D323D03D4"
				supplier   	"Logical View::DesignElement::Reporter"
				quidu      	"3AC65FFD0202"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "BiologicalCharacteristics"
			quid       	"3B1C028302F7"
			documentation 	"The annotation on the BioSequence this CompositeSequence represents.  Typically the sequences will be a Genes, Exons, or SpliceVariants."
			roles      	(list role_list
			    (object Role "biologicalCharacteristics"
				quid       	"3B1C0286007B"
				label      	"biologicalCharacteristics"
				supplier   	"Logical View::BioSequence::BioSequence"
				quidu      	"3B1BFF5B01BF"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$17"
				quid       	"3B1C0286008F"
				supplier   	"Logical View::DesignElement::CompositeSequence"
				quidu      	"3AC782CD02BF"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "DistanceUnit"
			quid       	"3B1C146D036A"
			documentation 	"The unit for the feature measures."
			roles      	(list role_list
			    (object Role "distanceUnit"
				quid       	"3B1C147102A7"
				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
				quidu      	"3B0B7F3A00BD"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$18"
				quid       	"3B1C147200DC"
				supplier   	"Logical View::ArrayDesign::FeatureGroup"
				quidu      	"3AC6625D03D3"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Unit"
			quid       	"3B1C1794039C"
			documentation 	"The Unit associated with the Measurement."
			roles      	(list role_list
			    (object Role "unit"
				quid       	"3B1C17990050"
				label      	"unit"
				supplier   	"Logical View::Measurement::Unit"
				quidu      	"3AC66C37005E"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$19"
				quid       	"3B1C17990082"
				supplier   	"Logical View::Measurement::Measurement"
				quidu      	"3ADDD63C0183"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Feature"
			quid       	"3B1D3E9B002A"
			documentation 	"The feature the FeatureInformation is supplying information for."
			roles      	(list role_list
			    (object Role "feature"
				quid       	"3B1D3E9B01D9"
				label      	"feature"
				supplier   	"Logical View::DesignElement::Feature"
				quidu      	"3AC65F4802FC"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$20"
				quid       	"3B1D3E9B01ED"
				supplier   	"Logical View::DesignElement::FeatureInformation"
				quidu      	"3B27F08702D0"
				client_cardinality 	(value cardinality "1"))))
		    (object Association "Reporter"
			quid       	"3B1D3E9D0376"
			documentation 	"Associates features with their reporter."
			roles      	(list role_list
			    (object Role "reporter"
				quid       	"3B1D3E9E0165"
				label      	"reporter"
				supplier   	"Logical View::DesignElement::Reporter"
				quidu      	"3AC65FFD0202"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "featureReporterMaps"
				quid       	"3B1D3E9E0179"
				label      	"featureReporterMaps"
				supplier   	"Logical View::DesignElement::FeatureReporterMap"
				quidu      	"3B1D3E0700F0"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 4"
				Containment 	"By Reference"
				is_navigable 	TRUE)))
		    (object Association "Sources"
			quid       	"3B1D3EA0028A"
			documentation 	"Association to the reporters that compose this CompositeSequence and where those reporters occur."
			roles      	(list role_list
			    (object Role "reporterPositionSources"
				quid       	"3B1D3EA1015F"
				label      	"reporterPositionSources"
				supplier   	"Logical View::DesignElement::ReporterPosition"
				quidu      	"3B1D455801A7"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$21"
				quid       	"3B1D3EA10169"
				supplier   	"Logical View::DesignElement::ReporterCompositeMap"
				quidu      	"3B1D3CEC00D5"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "CompositeSequence"
			quid       	"3B1D3EA3013A"
			documentation 	"A map to the reporters that compose this CompositeSequence."
			roles      	(list role_list
			    (object Role "compositeSequence"
				quid       	"3B1D3EA30339"
				label      	"compositeSequence"
				supplier   	"Logical View::DesignElement::CompositeSequence"
				quidu      	"3AC782CD02BF"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "reporterCompositeMaps"
				quid       	"3B1D3EA30343"
				label      	"reporterCompositeMaps"
				supplier   	"Logical View::DesignElement::ReporterCompositeMap"
				quidu      	"3B1D3CEC00D5"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE)))
		    (object Association "CompositeSequence"
			quid       	"3B1D3EA501B5"
			documentation 	"A map to the compositeSequences that compose this CompositeSequence."
			roles      	(list role_list
			    (object Role "compositeSequence"
				quid       	"3B1D3EA603BF"
				label      	"compositeSequence"
				supplier   	"Logical View::DesignElement::CompositeSequence"
				quidu      	"3AC782CD02BF"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "compositeCompositeMaps"
				quid       	"3B1D3EA603C9"
				label      	"compositeCompositeMaps"
				supplier   	"Logical View::DesignElement::CompositeCompositeMap"
				quidu      	"3B1D3CFA0392"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE)))
		    (object Association "Sources"
			quid       	"3B1D3EA80264"
			documentation 	"Association to the CompositeSequences that compose this CompositeSequence and where those CompositeSequences occur."
			roles      	(list role_list
			    (object Role "compositePositionSources"
				quid       	"3B1D3EAA002C"
				label      	"compositePositionSources"
				supplier   	"Logical View::DesignElement::CompositePosition"
				quidu      	"3B1D46380308"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$22"
				quid       	"3B1D3EAA0036"
				supplier   	"Logical View::DesignElement::CompositeCompositeMap"
				quidu      	"3B1D3CFA0392"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Reporter"
			quid       	"3B1D459F0362"
			documentation 	"A reporter that comprises part of a CompositeSequence."
			roles      	(list role_list
			    (object Role "reporter"
				quid       	"3B1D45A501C6"
				label      	"reporter"
				supplier   	"Logical View::DesignElement::Reporter"
				quidu      	"3AC65FFD0202"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$23"
				quid       	"3B1D45A501DA"
				supplier   	"Logical View::DesignElement::ReporterPosition"
				quidu      	"3B1D455801A7"
				client_cardinality 	(value cardinality "0..n")
				Containment 	"By Reference")))
		    (object Association "Composite"
			quid       	"3B1D464C0176"
			documentation 	"A source CompositeSequence that is part of a target CompositeSequence"
			roles      	(list role_list
			    (object Role "composite"
				quid       	"3B1D464D004B"
				label      	"composite"
				supplier   	"Logical View::DesignElement::CompositeSequence"
				quidu      	"3AC782CD02BF"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$24"
				quid       	"3B1D464D0055"
				supplier   	"Logical View::DesignElement::CompositePosition"
				quidu      	"3B1D46380308"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Types"
			quid       	"3B71A78B022F"
			documentation 	"The specific type of a feature, reporter, or composite.  A composite type might be a gene while a reporter type might be a cDNA clone or an oligo."
			roles      	(list role_list
			    (object Role "types"
				quid       	"3B71A78C0231"
				label      	"types"
				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$25"
				quid       	"3B71A78C024F"
				supplier   	"Logical View::ArrayDesign::DesignElementGroup"
				quidu      	"3B004F69014D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "SurfaceType"
			quid       	"3B71A7900060"
			documentation 	"The type of surface from a controlled vocabulary that would include terms such as non-absorptive, absorptive, etc."
			roles      	(list role_list
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	    (object Class_Category "Array"
		quid       	"3AC65B130113"
		documentation 	"Describes the process of creating arrays from array designs.  Includes information on how arrays are grouped together, if relevant, how an array deviates from its array design both in layout and per feature and potentially contains references to LIMS data that might contain more detail on the BioMaterial used to create the reporters."
		exportControl 	"Public"
		logical_models 	(list unit_reference_list
		    (object Class "Array"
			quid       	"3AC663AA00BB"
			documentation 	"The physical substrate along with its features and their annotation"
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B161FE20093"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			class_attributes 	(list class_attribute_list
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				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B1BF088038F"
				documentation 	"An identifying string, e.g. a barcode."
				type       	"String")
			    (object ClassAttribute "arrayXOrigin"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B71B0F8031F"
				documentation 	"This can indicate the x position on a slide, chip, etc. of the first Feature and is usually specified relative to the fiducial."
				type       	"float")
			    (object ClassAttribute "arrayYOrigin"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B71B0F8033D"
				documentation 	"This can indicate the y position on a slide, chip, etc. of the first Feature and is usually specified relative to the fiducial."
				type       	"float")
			    (object ClassAttribute "originRelativeTo"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
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				quid       	"3B71B0F80365"
				documentation 	"What the array origin is relative to, e.g. upper left corner, fiducial, etc."
				type       	"String"))
			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "FeatureDefect"
			attributes 	(list Attribute_Set
			    (object Attribute
				tool       	"Java"
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			    (object Attribute
				tool       	"Java"
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			    (object Attribute
				tool       	"Java"
				name       	"ConstructorIs"
				value      	("Ctor_Set" 62)))
			quid       	"3AC66450010A"
			documentation 	"Stores the defect information for a feature."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3694038B"
				supplier   	"Logical View::Extendable"
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			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "ArrayGroup"
			quid       	"3AC6625002E4"
			documentation 	
|An array package is a physical platform that contains one or more arrays that are separately addressable (e.g. several arrays that can be hybridized on a single microscope slide) or a virtual grouping together of arrays.
|
|The array package that has been manufactured has information about where certain artifacts about the array are located for scanning and feature extraction purposes.
			
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B16240D02AA"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "barcode"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3AC7ADDC0189"
				documentation 	"Identifier for the ArrayGroup."
				type       	"String")
			    (object ClassAttribute "arraySpacingX"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B6B262500F7"
				documentation 	"If there exist more than one array on a slide or a chip, then the spacing between the arrays is useful so that scanning / feature extraction software can crop images representing 1 unique bioassay. "
				type       	"float")
			    (object ClassAttribute "arraySpacingY"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
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				quid       	"3B6B26250115"
				documentation 	"If there exist more than one array on a slide or a chip, then the spacing between the arrays is useful so that scanning / feature extraction software can crop images representing 1 unique bioassay. "
				type       	"float")
			    (object ClassAttribute "numArrays"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B6B2625013D"
				documentation 	"This attribute defines the number of arrays on a chip or a slide. "
				type       	"int")
			    (object ClassAttribute "orientationMark"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
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				quid       	"3B6B2659034B"
				documentation 	"For a human to determine where the top left side of the array is, such as a barcode or frosted side of the glass, etc."
				type       	"String")
			    (object ClassAttribute "orientationMarkPosition"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
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				quid       	"3B6B26700181"
				documentation 	"One of top, bottom, left or right."
				type       	"enum {top,bottom,left,right}")
			    (object ClassAttribute "width"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B72FEEB0295"
				documentation 	"The width of the platform"
				type       	"float")
			    (object ClassAttribute "length"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B72FF1E0285"
				documentation 	"The length of the platform."
				type       	"float"))
			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "ArrayManufacture"
			attributes 	(list Attribute_Set
			    (object Attribute
				tool       	"Java"
				name       	"Final"
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				value      	("Ctor_Set" 62)))
			quid       	"3AD28699012A"
			documentation 	"Describes the process by which arrays are produced.  "
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
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				quid       	"3B1623FF0322"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			class_attributes 	(list class_attribute_list
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				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
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					value      	(value Text "0..1")))
				quid       	"3AD28EC4020D"
				documentation 	"The date the arrays were manufactured"
				type       	"String")
			    (object ClassAttribute "tolerance"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B71B51E0254"
				documentation 	"The allowable error of a feature printed to its intended position."
				type       	"float"))
			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "ArrayManufactureDeviation"
			quid       	"3AD286AA0305"
			documentation 	"Stores information of the potential difference between an array design and arrays that have been manufactured using that design (e.g. a tip failed to print several spots)."
			superclasses 	(list inheritance_relationship_list
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				quid       	"3B6B36850271"
				supplier   	"Logical View::Extendable"
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			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "Fiducial"
			quid       	"3B095D6D026B"
			documentation 	"A marking on the surface of the array that can be used to identify the array's origin, the coordinates of which are the fiducial's centroid."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3677011D"
				supplier   	"Logical View::Describable"
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			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "ManufactureLIMS"
			quid       	"3B1BF26B032F"
			documentation 	"Information on the physical production of arrays within the laboratory."
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				attributes 	(list Attribute_Set
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				quid       	"3B6B2BF70334"
				documentation 	"A brief description of the quality of the array manufacture process."
				type       	"String"))
			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "ManufactureLIMSBiomaterial"
			quid       	"3B1BF4DE015A"
			documentation 	"Stores the location from which a biomaterial was obtained."
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				quid       	"3B1BF53100A5"
				supplier   	"Logical View::Array::ManufactureLIMS"
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			    (object ClassAttribute "bioMaterialPlateIdentifier"
				attributes 	(list Attribute_Set
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					value      	(value Text "0..1")))
				quid       	"3B1BF56B013F"
				documentation 	"The plate from which a biomaterial was obtained."
				type       	"String")
			    (object ClassAttribute "bioMaterialPlateRow"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B1BF58600ED"
				documentation 	"The plate row from which a biomaterial was obtained.  Specified by a letter."
				type       	"String")
			    (object ClassAttribute "bioMaterialPlateCol"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3B1BF58F01FF"
				documentation 	"The plate column from which a biomaterial was obtained.  Specified by a number."
				type       	"String"))
			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "PositionDelta"
			quid       	"3B71AF400037"
			documentation 	"The delta the feature was actually printed on the array from the position specified for the feature in the array design."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B8551AE0149"
				supplier   	"Logical View::Extendable"
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			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "deltaX"
				quid       	"3B71AFD10086"
				documentation 	"Deviation from the y coordinate of this feature's position."
				type       	"float")
			    (object ClassAttribute "deltaY"
				quid       	"3B71AFE502AC"
				documentation 	"Deviation from the y coordinate of this feature's position."
				type       	"float"))
			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Class "ZoneDefect"
			quid       	"3B74600C017E"
			documentation 	"Stores the defect information for a zone."
			superclasses 	(list inheritance_relationship_list
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				quid       	"3B8551CC02F0"
				supplier   	"Logical View::Extendable"
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			module     	"Component View::Array"
			quidu      	"3C3338120390")
		    (object Association "Information2Arrays"
			quid       	"3AD289180219"
			documentation 	"Association between the manufactured array and the information on that manufacture."
			roles      	(list role_list
			    (object Role "information"
				quid       	"3AD2891A006D"
				label      	"information"
				supplier   	"Logical View::Array::ArrayManufacture"
				quidu      	"3AD28699012A"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "arrays"
				quid       	"3AD2891A006F"
				label      	"arrays"
				supplier   	"Logical View::Array::Array"
				quidu      	"3AC663AA00BB"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)))
		    (object Association "ArrayManufactureDeviations"
			quid       	"3AD289BA00A9"
			documentation 	"Association to classes to describe deviations from the ArrayDesign."
			roles      	(list role_list
			    (object Role "arrayManufactureDeviations"
				quid       	"3AD289BB037C"
				label      	"arrayManufactureDeviations"
				supplier   	"Logical View::Array::ArrayManufactureDeviation"
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				client_cardinality 	(value cardinality "0..n")
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				is_navigable 	TRUE)
			    (object Role "$UNNAMED$29"
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				supplier   	"Logical View::Array::Array"
				quidu      	"3AC663AA00BB"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Defects"
			quid       	"3AD289F000CF"
			documentation 	"Description on features who are manufactured in a different location than specified in the ArrayDesign."
			roles      	(list role_list
			    (object Role "featureDefects"
				quid       	"3AD289F101AD"
				label      	"featureDefects"
				supplier   	"Logical View::Array::FeatureDefect"
				quidu      	"3AC66450010A"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$30"
				quid       	"3AD289F101B7"
				supplier   	"Logical View::Array::ArrayManufactureDeviation"
				quidu      	"3AD286AA0305"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "PositionDelta"
			quid       	"3AD28A6500EB"
			documentation 	"How the feature deviates in position from the ArrayDesign."
			roles      	(list role_list
			    (object Role "positionDelta"
				quid       	"3AD28A6601A1"
				label      	"positionDelta"
				supplier   	"Logical View::Array::PositionDelta"
				quidu      	"3B71AF400037"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$31"
				quid       	"3AD28A6601A3"
				supplier   	"Logical View::Array::FeatureDefect"
				quidu      	"3AC66450010A"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Adjustments"
			quid       	"3AD28A6F02C6"
			documentation 	"Descriptions of how a Zone has been printed differently than specified in the ArrayDesign."
			roles      	(list role_list
			    (object Role "adjustments"
				quid       	"3AD28A71007A"
				label      	"adjustments"
				supplier   	"Logical View::Array::ZoneDefect"
				quidu      	"3B74600C017E"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$32"
				quid       	"3AD28A710084"
				supplier   	"Logical View::Array::ArrayManufactureDeviation"
				quidu      	"3AD286AA0305"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Feature"
			quid       	"3AD28D6B01FD"
			documentation 	"The feature that was manufactured defectively."
			roles      	(list role_list
			    (object Role "feature"
				quid       	"3AD28D6E0215"
				label      	"feature"
				supplier   	"Logical View::DesignElement::Feature"
				quidu      	"3AC65F4802FC"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 3"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$33"
				quid       	"3AD28D6E0229"
				supplier   	"Logical View::Array::FeatureDefect"
				quidu      	"3AC66450010A"
				client_cardinality 	(value cardinality "0..n")
				Containment 	"By Reference")))
		    (object Association "ProtocolApplications"
			quid       	"3B09486701AE"
			documentation 	"The protocols followed in the manufacturing of the arrays."
			roles      	(list role_list
			    (object Role "protocolApplications"
				quid       	"3B09486801A6"
				label      	"protocolApplications"
				supplier   	"Logical View::Protocol::ProtocolApplication"
				quidu      	"3AC6685300B6"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 5"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$34"
				quid       	"3B09486801BA"
				supplier   	"Logical View::Array::ArrayManufacture"
				quidu      	"3AD28699012A"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Fiducials"
			quid       	"3B095E090157"
			documentation 	"Association to the marks on the Array for alignment for the scanner."
			roles      	(list role_list
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				quid       	"3B095E0A00A5"
				label      	"fiducials"
				supplier   	"Logical View::Array::Fiducial"
				quidu      	"3B095D6D026B"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$35"
				quid       	"3B095E0A00AF"
				supplier   	"Logical View::Array::ArrayGroup"
				quidu      	"3AC6625002E4"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "FeatureLIMS"
			quid       	"3B1BF280005E"
			documentation 	"Information on the manufacture of the features."
			roles      	(list role_list
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				quid       	"3B1BF28102F5"
				label      	"featureLIMSs"
				supplier   	"Logical View::Array::ManufactureLIMS"
				quidu      	"3B1BF26B032F"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 4"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$36"
				quid       	"3B1BF28102FF"
				supplier   	"Logical View::Array::ArrayManufacture"
				quidu      	"3AD28699012A"
				client_cardinality 	(value cardinality "1")
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		    (object Association "Feature"
			quid       	"3B1BF2EF02A3"
			documentation 	"The feature whose LIMS information is being described."
			roles      	(list role_list
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				quid       	"3B1BF2F00358"
				label      	"feature"
				supplier   	"Logical View::DesignElement::Feature"
				quidu      	"3AC65F4802FC"
				client_cardinality 	(value cardinality "1")
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			    (object Role "$UNNAMED$37"
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				supplier   	"Logical View::Array::ManufactureLIMS"
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				client_cardinality 	(value cardinality "0..n"))))
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			documentation 	"Association to a LIMS data source for further information on the manufacturing process."
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		    (object Association "BioMaterial"
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			documentation 	"The BioMaterial used for the feature."
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				quid       	"3B1C107902EC"
				label      	"bioMaterial"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"
				client_cardinality 	(value cardinality "0..1")
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			documentation 	"The person or organization to contact for information concerning the ArrayManufacture."
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			    (object Role "$UNNAMED$40"
				quid       	"3B1C1F8D03AB"
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				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "DistanceUnit"
			quid       	"3B6B23D90110"
			documentation 	"The units the fiducial is measured in."
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				quid       	"3B6B23DA005D"
				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
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		    (object Association "DistanceUnit"
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			documentation 	"The unit of the measurement attributes."
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				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
				quidu      	"3B0B7F3A00BD"
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			quid       	"3B71ACBA0332"
			documentation 	"Indicates the type of defect (e.g. a missing feature or a moved feature)."
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				quid       	"3B71ACBC0013"
				label      	"defectType"
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				quidu      	"3AC66450010A"
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			quid       	"3B71AD7500E2"
			documentation 	"A descriptive string that indicates the type of a fiducial (e.g. the chrome border on an Affymetrix array, a laser ablation mark)."
			roles      	(list role_list
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				quid       	"3B71AD7503C7"
				label      	"fiducialType"
				supplier   	"Logical View::Description::OntologyEntry"
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				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$44"
				quid       	"3B71AD760025"
				supplier   	"Logical View::Array::Fiducial"
				quidu      	"3B095D6D026B"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "DistanceUnit"
			quid       	"3B71B07D012E"
			documentation 	"The unit for the attributes."
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				quid       	"3B71B07D012F"
				supplier   	"Logical View::Array::PositionDelta"
				quidu      	"3B71AF400037"
				is_aggregate 	TRUE)
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				quid       	"3B71B07D0130"
				label      	"distanceUnit"
				supplier   	"Logical View::Measurement::DistanceUnit"
				quidu      	"3B0B7F3A00BD"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)))
		    (object Association "Position"
			quid       	"3B73006A03B8"
			documentation 	"The position, relative to the upper left corner, of the fiducial"
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				quid       	"3B73006C0108"
				label      	"position"
				supplier   	"Logical View::DesignElement::Position"
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				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$46"
				quid       	"3B73006C011C"
				supplier   	"Logical View::Array::Fiducial"
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		    (object Association "QualityControlStatistics"
			quid       	"3B73012B0257"
			documentation 	"Information on the quality of the ArrayManufacture."
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				quid       	"3B73012C02E5"
				label      	"qualityControlStatistics"
				supplier   	"Logical View::NameValueType"
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			    (object Role "$UNNAMED$47"
				quid       	"3B73012C0303"
				supplier   	"Logical View::Array::ArrayManufacture"
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				client_cardinality 	(value cardinality "1")
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		    (object Association "SubstrateType"
			quid       	"3B745D0B031D"
			documentation 	"Commonly, arrays will be spotted on 1x3 glass microscope slides but there is nothing that says this must be the case.  This association is for scanners to inform them on the possible different formats of slides that can contain arrays."
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				quid       	"3B745D0C033D"
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				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
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			    (object Role "$UNNAMED$48"
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			documentation 	"Reference to the Zone that was misprinted."
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			quid       	"3B7460E70274"
			documentation 	"Indicates the type of defect (e.g. a missing zone or a moved zone)."
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				quid       	"3B7460E90122"
				label      	"defectType"
				supplier   	"Logical View::Description::OntologyEntry"
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				supplier   	"Logical View::Array::ZoneDefect"
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				client_cardinality 	(value cardinality "1")
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			quid       	"3B74621F0218"
			documentation 	"How the zone deviates in position from the ArrayDesign."
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				quid       	"3B74622001A1"
				label      	"positionDelta"
				supplier   	"Logical View::Array::PositionDelta"
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	    (object Class_Category "BioMaterial"
		quid       	"3AC65B430298"
		documentation 	"The classes in this package describe how a BioSource is treated to obtain the BioMaterial (typically a LabeledExtract) that is used by a BioAssayCreation in combination with an Array to produce a PhysicalBioAssay.  A set of treatments are typically linear in time but can form a Directed Acyclic Graph. "
		exportControl 	"Public"
		logical_models 	(list unit_reference_list
		    (object Class "BioSource"
			quid       	"3AC6647A0042"
			documentation 	"The BioSource is the original source material before any treatment events.  It is also a top node of the directed acyclic graph generated by treatments.   The association to OntologyEntry allows enumeration of a BioSource's inherent properties."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3AE592B6027D"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Class "BioMaterial"
			attributes 	(list Attribute_Set
			    (object Attribute
				tool       	"Java"
				name       	"Final"
				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"Static"
				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"GenerateDefaultConstructor"
				value      	TRUE)
			    (object Attribute
				tool       	"Java"
				name       	"GenerateFinalizer"
				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"GenerateStaticInitializer"
				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"GenerateInstanceInitializer"
				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"GenerateCode"
				value      	TRUE)
			    (object Attribute
				tool       	"Java"
				name       	"DisableAutoSync"
				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"ConstructorIs"
				value      	("Ctor_Set" 62)))
			quid       	"3AC664AF0016"
			documentation 	"BioMaterial is an abstract class that represents the important substances such as cells, tissues, DNA, proteins, etc...  Biomaterials can be related to other biomaterial through a directed acyclic graph (represented by treatment(s))."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B16201B02E4"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325"
			abstract   	TRUE)
		    (object Class "LabeledExtract"
			quid       	"3AC664D802DC"
			documentation 	"LabeledExtracts are special BioSamples that have Compounds which are detectable (these are often fluorescent or reactive moieties)."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3ADC793E0181"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Class "BioSample"
			quid       	"3AC665B900AE"
			documentation 	"BioSamples are products of treatments that are of interest.  BioSamples are often used as the sources for other biosamples.  The Type attribute describes the role the BioSample holds in the treatment hierarchy.  This type can be an extract."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3AE592BB0068"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Class "Compound"
			quid       	"3AC666770397"
			documentation 	"A Compound can be a simple compound such as SDS (sodium dodecyl sulfate).  It may also be made of other Compounds in proportions using CompoundMeasurements to enumerate the Compounds and their amounts such as LB (Luria Broth) Media."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B16201E0342"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "isSolvent"
				quid       	"3B1E75430280"
				documentation 	"A Compound may be a special case Solvent."
				type       	"boolean"
				initv      	"false"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Class "CompoundMeasurement"
			quid       	"3B0321AB005E"
			documentation 	"A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3C62014D"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Class "BioMaterialMeasurement"
			quid       	"3B045DDB006A"
			documentation 	"A BioMaterialMeasurement is a pairing of a source BioMaterial and an amount (Measurement) of that BioMaterial."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3C0C02EE"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Class "Treatment"
			quid       	"3AC66518032E"
			documentation 	"The process by which a biomaterial is created (from source biomaterials).  Treatments have an order and an action."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B0432E100F6"
				supplier   	"Logical View::BioEvent::BioEvent"
				quidu      	"3B0432520245"))
			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "order"
				attributes 	(list Attribute_Set
				    (object Attribute
					tool       	"UML"
					name       	"multiplicity"
					value      	(value Text "0..1")))
				quid       	"3ADDDA3802F3"
				documentation 	"The chronological order in which a treatment occurred (in relation to other treatments).  More than one treatment can have the same chronological order indicating that they happened (or were caused to happen) simultaneously."
				type       	"int"))
			module     	"Component View::BioMaterial"
			quidu      	"3C333A1E0325")
		    (object Association "Measurement"
			quid       	"3ADDD6B8020E"
			documentation 	"Measures events like duration, centrifuge speed, etc."
			roles      	(list role_list
			    (object Role "actionMeasurement"
				quid       	"3ADDD6B90183"
				documentation 	"The measurement of an action, time exposed, speed of centrifuge, etc."
				label      	"actionMeasurement"
				supplier   	"Logical View::Measurement::Measurement"
				quidu      	"3ADDD63C0183"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$52"
				quid       	"3ADDD6B9018D"
				supplier   	"Logical View::BioMaterial::Treatment"
				quidu      	"3AC66518032E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Treatments"
			quid       	"3ADDDA1700C4"
			documentation 	"This association is one way from BioMaterial to Treatment.  From this a BioMaterial can discover the amount and type of BioMaterial that was part of the treatment that produced it."
			roles      	(list role_list
			    (object Role "treatments"
				quid       	"3ADDDA180076"
				label      	"treatments"
				supplier   	"Logical View::BioMaterial::Treatment"
				quidu      	"3AC66518032E"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 4"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$53"
				quid       	"3ADDDA18008A"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Sources"
			quid       	"3ADDDB4602A1"
			documentation 	"The BioMaterials and the amounts used in the treatment"
			roles      	(list role_list
			    (object Role "sourceBioMaterialMeasurements"
				quid       	"3ADDDB47034C"
				label      	"sourceBioMaterialMeasurements"
				supplier   	"Logical View::BioMaterial::BioMaterialMeasurement"
				quidu      	"3B045DDB006A"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 4"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$54"
				quid       	"3ADDDB47037F"
				supplier   	"Logical View::BioMaterial::Treatment"
				quidu      	"3AC66518032E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Components"
			quid       	"3ADDDC290275"
			documentation 	"The Compounds and their amounts used to create this Compound."
			roles      	(list role_list
			    (object Role "componentCompounds"
				quid       	"3ADDDC2A033F"
				label      	"componentCompounds"
				supplier   	"Logical View::BioMaterial::CompoundMeasurement"
				quidu      	"3B0321AB005E"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$55"
				quid       	"3ADDDC2A0349"
				supplier   	"Logical View::BioMaterial::Compound"
				quidu      	"3AC666770397"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Compounds"
			quid       	"3B02A36C02AB"
			documentation 	"The compounds and their amounts used in the treatment."
			roles      	(list role_list
			    (object Role "compoundMeasurements"
				quid       	"3B02A36E01B3"
				label      	"compoundMeasurements"
				supplier   	"Logical View::BioMaterial::CompoundMeasurement"
				quidu      	"3B0321AB005E"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$56"
				quid       	"3B02A36E01B4"
				supplier   	"Logical View::BioMaterial::Treatment"
				quidu      	"3AC66518032E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Measurement"
			quid       	"3B02A39E0357"
			documentation 	"The amount of the Compound."
			roles      	(list role_list
			    (object Role "measurement"
				quid       	"3B02A3A6014F"
				label      	"measurement"
				supplier   	"Logical View::Measurement::Measurement"
				quidu      	"3ADDD63C0183"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$57"
				quid       	"3B02A3A60163"
				supplier   	"Logical View::BioMaterial::CompoundMeasurement"
				quidu      	"3B0321AB005E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Compound"
			quid       	"3B032237005F"
			documentation 	"A Compound to be used to create another Compound."
			roles      	(list role_list
			    (object Role "compound"
				quid       	"3B03223800BB"
				label      	"compound"
				supplier   	"Logical View::BioMaterial::Compound"
				quidu      	"3AC666770397"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$58"
				quid       	"3B03223800C5"
				supplier   	"Logical View::BioMaterial::CompoundMeasurement"
				quidu      	"3B0321AB005E"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "BioMaterial"
			quid       	"3B045E2D01D0"
			documentation 	"A source BioMaterial for a treatment."
			roles      	(list role_list
			    (object Role "bioMaterial"
				quid       	"3B045E2E0218"
				label      	"bioMaterial"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$59"
				quid       	"3B045E2E0240"
				supplier   	"Logical View::BioMaterial::BioMaterialMeasurement"
				quidu      	"3B045DDB006A"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Measurement"
			quid       	"3B045E360179"
			documentation 	"The amount of the BioMaterial."
			roles      	(list role_list
			    (object Role "measurement"
				quid       	"3B045E370102"
				label      	"measurement"
				supplier   	"Logical View::Measurement::Measurement"
				quidu      	"3ADDD63C0183"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 2"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$60"
				quid       	"3B045E370117"
				supplier   	"Logical View::BioMaterial::BioMaterialMeasurement"
				quidu      	"3B045DDB006A"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Labels"
			quid       	"3B1E50BE002E"
			documentation 	"Compound used to label the extract."
			roles      	(list role_list
			    (object Role "labels"
				quid       	"3B1E50C00280"
				label      	"labels"
				supplier   	"Logical View::BioMaterial::Compound"
				quidu      	"3AC666770397"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$61"
				quid       	"3B1E50C00294"
				supplier   	"Logical View::BioMaterial::LabeledExtract"
				quidu      	"3AC664D802DC"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Action"
			quid       	"3B71D0C70170"
			documentation 	"The event that occurred (e.g. grow, wait, add, etc...).  The actions should be a recommended vocabulary"
			roles      	(list role_list
			    (object Role "action"
				quid       	"3B71D0C900FA"
				label      	"action"
				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$62"
				quid       	"3B71D0C9014B"
				supplier   	"Logical View::BioMaterial::Treatment"
				quidu      	"3AC66518032E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Type"
			quid       	"3B71D28D02DB"
			documentation 	"The Type attribute describes the role the BioSample holds in the treatment hierarchy.  This type can be an extract."
			roles      	(list role_list
			    (object Role "type"
				quid       	"3B71D28F0125"
				label      	"type"
				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$63"
				quid       	"3B71D28F017F"
				supplier   	"Logical View::BioMaterial::BioSample"
				quidu      	"3AC665B900AE"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "MaterialType"
			quid       	"3B71D3C20394"
			documentation 	"The type of material used, i.e. rna, dna, lipid, phosphoprotein, etc."
			roles      	(list role_list
			    (object Role "materialType"
				quid       	"3B71D3C7020A"
				label      	"materialType"
				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 3"
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				is_navigable 	TRUE)
			    (object Role "$UNNAMED$64"
				quid       	"3B71D3C70264"
				supplier   	"Logical View::BioMaterial::BioMaterial"
				quidu      	"3AC664AF0016"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
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	    (object Class_Category "BioAssay"
		quid       	"3AC65B8A01FA"
		documentation 	
|Provides classes that contain information and annotation on the event of joining an Array with a BioMaterial preparation, the acquisition of images and the extraction of data on a per feature basis from those images.  The derived classes of BioAssay represent the base PhysicalBioAssays which lead to the production of Images, the MeasuredBioAssay which is associated with the set of quantitations produced by FeatureExtraction, and DerivedBioAssay (see BioAssayData package) which groups together BioAssays that have been analyzed together to produce further refinement of the quantitations.
|    
|The design of this package and the related BioAssayData package was driven by the following query considerations and the desire to return as little data as necessary to satisfy a query.   Often, the first set of queries for experiments below the Experiment level will want to discover the why of an experiment and this is captured in the BioAssay class through its FactorValue, BioEvent and Description associations.  This separates it from the data but allows an overview of the experiment hierarchy.  The BioAssayData class association to BioDataValues is optional only to allow queries on them to discover the how of the experiment through the association to the transformation and mappings of the three BioAssayData dimensions and the protocols used.  Once a researcher, for instance, has narrowed down the experiments of interest then the actual data, represented by the BioDataValues, can be downloaded.  Because these data can be in the hundreds of megabytes to gigabytes range, it was considered desirable to be able to return information and annotation on the experiment without the data.
		
		exportControl 	"Public"
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		    (object Class "PhysicalBioAssay"
			quid       	"3AC667950045"
			documentation 	"A bioAssay created by the bioAssayCreation event (e.g. in gene expression analysis this event is represented by the hybridization event)."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B01A0AC00D6"
				supplier   	"Logical View::BioAssay::BioAssay"
				quidu      	"3B019F720189"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "DerivedBioAssay"
			quid       	"3ADC7A350367"
			documentation 	"A BioAssay that is created by the Transformation BioEvent from one or more MeasuredBioAssays or DerivedBioAssays."
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			    (object Inheritance_Relationship
				quid       	"3B01A09A00E4"
				supplier   	"Logical View::BioAssay::BioAssay"
				quidu      	"3B019F720189"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "Image"
			attributes 	(list Attribute_Set
			    (object Attribute
				tool       	"Java"
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			quid       	"3AC75AFD00B1"
			documentation 	
|An image is created by an imageAcquisition event, typically by scanning the hybridized array (the PhysicalBioAssay).
|
			
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			    (object Inheritance_Relationship
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				quid       	"3B1623E500EA"
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					tool       	"UML"
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				quid       	"3B03194D03BB"
				documentation 	"The file location in which an image may be found."
				type       	"String"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "BioAssay"
			attributes 	(list Attribute_Set
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			quid       	"3B019F720189"
			documentation 	
|An abstract class which represents both physical and computational groupings of arrays and biomaterials.
|
			
			superclasses 	(list inheritance_relationship_list
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				quid       	"3B162000033F"
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				quidu      	"3B0D2BB103A2"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110"
			abstract   	TRUE)
		    (object Class "Channel"
			quid       	"3B041F700384"
			documentation 	"A channel represents an independent acquisition scheme for the ImageAcquisition event, typically a wavelength."
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			    (object Inheritance_Relationship
				quid       	"3B1623E202EE"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
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			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "MeasuredBioAssay"
			quid       	"3B04399E02AF"
			documentation 	"A measured bioAssay is the direct processing of information in a physical bioAssay by the featureExtraction event.  Often uses images which are referenced through the physical bioAssay."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B043B3C0341"
				supplier   	"Logical View::BioAssay::BioAssay"
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			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "BioAssayCreation"
			quid       	"3B04362801F7"
			documentation 	"The process by which an array and one or more biomaterials are combined to create a bioAssayCreation."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B04367E024B"
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			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "FeatureExtraction"
			quid       	"3ADC78830100"
			documentation 	"The process by which data is extracted from an image producing a measuredBioAssayData and a measuredBioAssay."
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			    (object Inheritance_Relationship
				quid       	"3B0435E400AF"
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			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "Hybridization"
			quid       	"3B0436850128"
			documentation 	"The archetypal bioAssayCreation event, whereby biomaterials are hybridized to an array."
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			    (object Inheritance_Relationship
				quid       	"3B0436B30247"
				supplier   	"Logical View::BioAssay::BioAssayCreation"
				quidu      	"3B04362801F7"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "ImageAcquisition"
			quid       	"3B1C2BDA03B3"
			documentation 	"The process by which an image is generated (typically scanning)."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B1C2BE8018C"
				supplier   	"Logical View::BioAssay::BioAssayTreatment"
				quidu      	"3B0436C6030C"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Class "BioAssayTreatment"
			quid       	"3B0436C6030C"
			documentation 	"The event which records the process by which PhysicalBioAssays are processed (typically washing, blocking, etc...)."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B0436E401F7"
				supplier   	"Logical View::BioEvent::BioEvent"
				quidu      	"3B0432520245"))
			module     	"Component View::BioAssay"
			quidu      	"3C333A150110")
		    (object Association "Array"
			quid       	"3ADC7A13039A"
			documentation 	"The array used in the BioAssayCreation event."
			roles      	(list role_list
			    (object Role "array"
				quid       	"3ADC7A1401F7"
				label      	"array"
				supplier   	"Logical View::Array::Array"
				quidu      	"3AC663AA00BB"
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			    (object Role "$UNNAMED$81"
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				client_cardinality 	(value cardinality "0..1"))))
		    (object Association "SourceBioMaterial"
			quid       	"3B03060A0339"
			documentation 	"The BioSample and its amount used in the BioAssayCreation event."
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				quid       	"3B03060C029B"
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				client_cardinality 	(value cardinality "1")
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			quid       	"3B0316C20184"
			documentation 	"The Images associated with this PhysicalBioAssay by ImageAcquisition."
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				label      	"physicalBioAssayData"
				supplier   	"Logical View::BioAssay::Image"
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			documentation 	"The PhysicalBioAssay used in the FeatureExtraction event."
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			documentation 	"Channels can be non-null for all subclasses.  For instance, collapsing across replicate features will create a DerivedBioAssay that will potentially reference channels."
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		documentation 	"Specifies classes that allow tracking of changes and information on user permissions to view the data and annotation."
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			module     	"Component View::AuditAndSecurity"
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				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
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			module     	"Component View::AuditAndSecurity"
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				quid       	"3B85736A0038"
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			abstract   	TRUE)
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			documentation 	"The organization a person belongs to."
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			documentation 	"The contact for creating or changing the instance referred to by the Audit."
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				supplier   	"Logical View::AuditAndSecurity::Contact"
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			quid       	"3B0415B3034E"
			documentation 	"Specifies which security groups have permission to view the associated object."
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				label      	"securityGroups"
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		    (object Association "Members"
			quid       	"3B0415EE0385"
			documentation 	"The members of the Security Group."
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				supplier   	"Logical View::AuditAndSecurity::SecurityGroup"
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				quid       	"3B0415F40030"
				label      	"members"
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			quid       	"3B1C27E50384"
			documentation 	"The owner of the security rights."
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				supplier   	"Logical View::AuditAndSecurity::Contact"
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			documentation 	"The containing organization (the university or business which a lab belongs to, etc.)"
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			quid       	"3AD47A090098"
			title      	"Overview"
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				icon_style 	"Icon"
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	    (object Class_Category "BioAssayData"
		quid       	"3AC6692E030A"
		documentation 	
|The classes defined here provide data and the information and annotation on the derivation of that data.  Some of the scenarios that might occur are the following.
|
|FeatureExtraction of a single PhysicalBioAssay produces MeasuredBioAssayData that has a single BioAssay on the BioAssayDimension, typically the Features described in the ArrayDesign on the DesignElementDimension, and the Quantitations associated with the application of a  FeatureExtraction protocol on the QuantitationDimension.
|
|An error model transformation might be applied that doesn't change the BioAssayDimension or the DesignElementDimension but likely changes the QuantitationDimension.  A transformation on replicate Reporters or CompositeSequences might be applied on the single BioAssay that would change the DesignElementDimension and the QuantitationDimension both.  Replicate and Control BioAssays might be added to the BioAssayDimension and a transformation could change the BioAssayDimension and the QuantitationDimension but not change the DesignElementDimension to produce a new DerivedBioAssayData.  Or some combination of the above transformations could be performed at once to change all three dimensions.
|
|Because the classes derive from Describable, the Experimenter can provide as much detail at each level of the class hierarchy as desired.
		
		exportControl 	"Public"
		logical_models 	(list unit_reference_list
		    (object Class "BioAssayData"
			attributes 	(list Attribute_Set
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				value      	FALSE)
			    (object Attribute
				tool       	"Java"
				name       	"ConstructorIs"
				value      	("Ctor_Set" 62)))
			quid       	"3AC75A1C000D"
			documentation 	"Represents the dataset created when the BioAssays are created.  BioAssayData is the entry point to the values.  Because the actual values are represented by a different object, BioDataValues, which can be memory intensive, the annotation of the transformation can be gotten separate from the data."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B162009032E"
				documentation 	"Allows inheritence of the Identifable attributes, identifier and name, and the Describable associations, descriptions and auditTrail."
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF"
			abstract   	TRUE)
		    (object Class "QuantitationTypeDimension"
			quid       	"3AC762460012"
			documentation 	"An ordered list of quantitationTypes."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3B3A02CE"
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "BioAssayMapping"
			quid       	"3B003BE803A7"
			documentation 	"Container of the mappings of the input BioAssay dimensions to the output BioAssay dimension."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3A150196"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "DesignElementDimension"
			quid       	"3B003E3B0384"
			documentation 	"An ordered list of designElements. It will be realized as one of its three subclasses."
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			    (object Inheritance_Relationship
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				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF"
			abstract   	TRUE)
		    (object Class "BioAssayDatum"
			quid       	"3B003F520399"
			documentation 	"A single cell of the quantitation, bioAssay, designElement matrix."
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			    (object Inheritance_Relationship
				quid       	"3B6B398B0333"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "value"
				quid       	"3B02F8A20239"
				documentation 	"The datum value."
				type       	"any"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "DerivedBioAssayData"
			quid       	"3B040109026B"
			documentation 	"The output of a transformation event."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B041F47012D"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "MeasuredBioAssayData"
			quid       	"3B0303D703B1"
			documentation 	"The data associated with the MeasuredBioAssay produced by FeatureExtraction."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B03040F00A5"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "QuantitationTypeMapping"
			quid       	"3B1D52E8011E"
			documentation 	"Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B3B540019"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "DesignElementMapping"
			quid       	"3B1D52F7033C"
			documentation 	"Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B47A90054"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "BioDataCube"
			quid       	"3B3B868302F9"
			documentation 	"A three-dimensional cube representation of the data."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B54EA0D0397"
				supplier   	"Logical View::BioAssayData::BioDataValues"
				quidu      	"3B54E99B02E9"))
			class_attributes 	(list class_attribute_list
			    (object ClassAttribute "cube"
				quid       	"3B3B89B6009B"
				documentation 	"Three dimension array, indexed by the three dimensions to provide the data for the BioAssayData."
				type       	"any[][][]")
			    (object ClassAttribute "order"
				quid       	"3CE7F06F0369"
				documentation 	"The order to expect the dimension.  The enumeration uses the first letter of the three dimensions to represent the six possible orderings."
				type       	"enum {BDQ,BQD,DBQ,DQB,QBD,QDB}"
				initv      	"BDQ"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "BioDataValues"
			quid       	"3B54E99B02E9"
			documentation 	"The actual values for the BioAssayCube. "
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			    (object Inheritance_Relationship
				quid       	"3B6B3B000221"
				supplier   	"Logical View::Extendable"
				quidu      	"3B6B346C01A7"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF"
			abstract   	TRUE)
		    (object Class "BioDataTuples"
			quid       	"3B54E9DF021E"
			documentation 	"A relational, tuple representation of the data."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B54EA0901B1"
				supplier   	"Logical View::BioAssayData::BioDataValues"
				quidu      	"3B54E99B02E9"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "BioAssayDimension"
			quid       	"3B003EC6023A"
			documentation 	"An ordered list of bioAssays."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B6B39EF0304"
				supplier   	"Logical View::Identifiable"
				quidu      	"3B0D2BB103A2"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "QuantitationTypeMap"
			quid       	"3B1D3C9D018F"
			documentation 	"A QuantitationTypeMap is the description of how source QuantitationTypes are mathematically transformed into a target QuantitationType."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B1D3CD10158"
				supplier   	"Logical View::BioEvent::Map"
				quidu      	"3B02F7E203D8"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "Transformation"
			quid       	"3AC75A51038E"
			documentation 	"The process by which derivedBioAssays are created from measuredBioAssays and/or derivedBioAssays.  It uses mappings to indicate the input and output dimensions.  "
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B0432EA01E9"
				supplier   	"Logical View::BioEvent::BioEvent"
				quidu      	"3B0432520245"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "DesignElementMap"
			quid       	"3B1D3CAF02B8"
			documentation 	"A DesignElementMap is the description of how source DesignElements are transformed into a target DesignElement."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B1D3CD503A3"
				supplier   	"Logical View::BioEvent::Map"
				quidu      	"3B02F7E203D8"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF"
			abstract   	TRUE)
		    (object Class "BioAssayMap"
			quid       	"3B1D3C8D0237"
			documentation 	"The BioAssayMap is the description of how source MeasuredBioAssays and/or DerivedBioAssays are manipulated (mathematically) to produce DerivedBioAssays."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B1D3CCC02C3"
				supplier   	"Logical View::BioEvent::Map"
				quidu      	"3B02F7E203D8"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "CompositeSequenceDimension"
			quid       	"3B9BF6CA0265"
			documentation 	"Specialized DesignElementDimension to hold CompositeSequences."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B9BF72602AD"
				supplier   	"Logical View::BioAssayData::DesignElementDimension"
				quidu      	"3B003E3B0384"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "ReporterDimension"
			quid       	"3B9BF6E9006B"
			documentation 	"Specialized DesignElementDimension to hold Reporters."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B9BF73103B8"
				supplier   	"Logical View::BioAssayData::DesignElementDimension"
				quidu      	"3B003E3B0384"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Class "FeatureDimension"
			quid       	"3B9BF6FB01ED"
			documentation 	"Specialized DesignElementDimension to hold Features."
			superclasses 	(list inheritance_relationship_list
			    (object Inheritance_Relationship
				quid       	"3B9BF72B0160"
				supplier   	"Logical View::BioAssayData::DesignElementDimension"
				quidu      	"3B003E3B0384"))
			module     	"Component View::BioAssayData"
			quidu      	"3C333A1A02CF")
		    (object Association "QuantitationTypes"
			quid       	"3AC7A51B021C"
			documentation 	"The QuantitationTypes for this Dimension."
			roles      	(list role_list
			    (object Role "quantitationTypes"
				quid       	"3AC7A51C03E1"
				label      	"quantitationTypes"
				supplier   	"Logical View::QuantitationType::QuantitationType"
				quidu      	"3AC77A4C0047"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"ordered rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$102"
				quid       	"3AC7A51C03E3"
				supplier   	"Logical View::BioAssayData::QuantitationTypeDimension"
				quidu      	"3AC762460012"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Target2Transformation"
			quid       	"3B003B31012D"
			documentation 	"The association between the DerivedBioAssayData and the Transformation event that produced it."
			roles      	(list role_list
			    (object Role "producerTransformation"
				quid       	"3B003B35009C"
				label      	"producerTransformation"
				supplier   	"Logical View::BioAssayData::Transformation"
				quidu      	"3AC75A51038E"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "derivedBioAssayDataTarget"
				quid       	"3B003B3500A6"
				label      	"derivedBioAssayDataTarget"
				supplier   	"Logical View::BioAssayData::DerivedBioAssayData"
				quidu      	"3B040109026B"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE
				is_aggregate 	TRUE)))
		    (object Association "Sources"
			quid       	"3B003B74010B"
			documentation 	"The BioAssayData sources that the Transformation event uses to produce the target DerivedBioAssayData."
			roles      	(list role_list
			    (object Role "bioAssayDataSources"
				quid       	"3B003B7C01C1"
				label      	"bioAssayDataSources"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$103"
				quid       	"3B003B7C01CB"
				supplier   	"Logical View::BioAssayData::Transformation"
				quidu      	"3AC75A51038E"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "BioAssayMapping"
			quid       	"3B003BF202C5"
			documentation 	"The collection of mappings for the BioAssays."
			roles      	(list role_list
			    (object Role "bioAssayMapping"
				quid       	"3B003BF400BF"
				label      	"bioAssayMapping"
				supplier   	"Logical View::BioAssayData::BioAssayMapping"
				quidu      	"3B003BE803A7"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 5"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$104"
				quid       	"3B003BF400C9"
				supplier   	"Logical View::BioAssayData::Transformation"
				quidu      	"3AC75A51038E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "CompositeSequences"
			quid       	"3B003E520034"
			documentation 	"The CompositeSequences for this Dimension."
			roles      	(list role_list
			    (object Role "compositeSequences"
				quid       	"3B003E5301BC"
				label      	"compositeSequences"
				supplier   	"Logical View::DesignElement::CompositeSequence"
				quidu      	"3AC782CD02BF"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"ordered rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$105"
				quid       	"3B003E5301C6"
				supplier   	"Logical View::BioAssayData::CompositeSequenceDimension"
				quidu      	"3B9BF6CA0265"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "AssayData"
			quid       	"3B003F690071"
			documentation 	"The collection of BioAssayData tuples."
			roles      	(list role_list
			    (object Role "bioAssayTupleData"
				quid       	"3B003F6A02B8"
				label      	"bioAssayTupleData"
				supplier   	"Logical View::BioAssayData::BioAssayDatum"
				quidu      	"3B003F520399"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$106"
				quid       	"3B003F6A02B9"
				supplier   	"Logical View::BioAssayData::BioDataTuples"
				quidu      	"3B54E9DF021E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "DesignElement"
			quid       	"3B003F8A0065"
			documentation 	"The DesignElement associated with the value of the BioAssayDatum."
			roles      	(list role_list
			    (object Role "designElement"
				quid       	"3B003F8B0157"
				label      	"designElement"
				supplier   	"Logical View::DesignElement::DesignElement"
				quidu      	"3AC78237007E"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$107"
				quid       	"3B003F8B0161"
				supplier   	"Logical View::BioAssayData::BioAssayDatum"
				quidu      	"3B003F520399"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "QuantitationType"
			quid       	"3B003F92016B"
			documentation 	"The QuantitationType associated with the value of the BioAssayDatum."
			roles      	(list role_list
			    (object Role "quantitationType"
				quid       	"3B003F94011D"
				label      	"quantitationType"
				supplier   	"Logical View::QuantitationType::QuantitationType"
				quidu      	"3AC77A4C0047"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 3"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$108"
				quid       	"3B003F940127"
				supplier   	"Logical View::BioAssayData::BioAssayDatum"
				quidu      	"3B003F520399"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "BioAssayDimension"
			quid       	"3B00423D03E4"
			documentation 	"The BioAssays of the BioAssayData."
			roles      	(list role_list
			    (object Role "bioAssayDimension"
				quid       	"3B00423F0238"
				label      	"bioAssayDimension"
				supplier   	"Logical View::BioAssayData::BioAssayDimension"
				quidu      	"3B003EC6023A"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 2"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$109"
				quid       	"3B00423F0242"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "DesignElementDimension"
			quid       	"3B00427401BC"
			documentation 	"The DesignElements of the BioAssayData."
			roles      	(list role_list
			    (object Role "designElementDimension"
				quid       	"3B00427501BD"
				label      	"designElementDimension"
				supplier   	"Logical View::BioAssayData::DesignElementDimension"
				quidu      	"3B003E3B0384"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 3"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$110"
				quid       	"3B00427501C7"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "QuantitationTypeDimension"
			quid       	"3B00429A006C"
			documentation 	"The QuantitationTypes of the BioAssayData."
			roles      	(list role_list
			    (object Role "quantitationTypeDimension"
				quid       	"3B00429B00F0"
				label      	"quantitationTypeDimension"
				supplier   	"Logical View::BioAssayData::QuantitationTypeDimension"
				quidu      	"3AC762460012"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 4"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$111"
				quid       	"3B00429B00FA"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "BioAssay"
			quid       	"3B01A01D0058"
			documentation 	"The BioAssay associated with the value of the BioAssayDatum."
			roles      	(list role_list
			    (object Role "bioAssay"
				quid       	"3B01A01D0059"
				label      	"bioAssay"
				supplier   	"Logical View::BioAssay::BioAssay"
				quidu      	"3B019F720189"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$112"
				quid       	"3B01A01D005A"
				supplier   	"Logical View::BioAssayData::BioAssayDatum"
				quidu      	"3B003F520399"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "BioAssayMaps"
			quid       	"3B02F80E0042"
			documentation 	"The maps for the BioAssays."
			roles      	(list role_list
			    (object Role "bioAssayMaps"
				quid       	"3B02F80F0274"
				label      	"bioAssayMaps"
				supplier   	"Logical View::BioAssayData::BioAssayMap"
				quidu      	"3B1D3C8D0237"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$113"
				quid       	"3B02F80F027E"
				supplier   	"Logical View::BioAssayData::BioAssayMapping"
				quidu      	"3B003BE803A7"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Statistics"
			quid       	"3B1BFA8203E1"
			documentation 	"Statistics on the Quality of the BioAssayData."
			roles      	(list role_list
			    (object Role "summaryStatistics"
				quid       	"3B1BFA83039D"
				label      	"summaryStatistics"
				supplier   	"Logical View::NameValueType"
				quidu      	"3AC79464004D"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 1"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$114"
				quid       	"3B1BFA8303D9"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "designElementMaps"
			quid       	"3B1D52BA0027"
			documentation 	"The maps for the DesignElements."
			roles      	(list role_list
			    (object Role "designElementMaps"
				quid       	"3B1D52BA0230"
				label      	"designElementMaps"
				supplier   	"Logical View::BioAssayData::DesignElementMap"
				quidu      	"3B1D3CAF02B8"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$115"
				quid       	"3B1D52BA0244"
				supplier   	"Logical View::BioAssayData::DesignElementMapping"
				quidu      	"3B1D52F7033C"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "QuantitationTypeMaps"
			quid       	"3B1D52BC020B"
			documentation 	"The maps for the QuantitationTypes."
			roles      	(list role_list
			    (object Role "quantitationTypeMaps"
				quid       	"3B1D52BE0073"
				label      	"quantitationTypeMaps"
				supplier   	"Logical View::BioAssayData::QuantitationTypeMap"
				quidu      	"3B1D3C9D018F"
				client_cardinality 	(value cardinality "1..n")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$116"
				quid       	"3B1D52BE0091"
				supplier   	"Logical View::BioAssayData::QuantitationTypeMapping"
				quidu      	"3B1D52E8011E"
				client_cardinality 	(value cardinality "0..n"))))
		    (object Association "Mapping"
			quid       	"3B1D530802A0"
			documentation 	"The collection of mappings for the DesignElements."
			roles      	(list role_list
			    (object Role "designElementMapping"
				quid       	"3B1D53090283"
				label      	"designElementMapping"
				supplier   	"Logical View::BioAssayData::DesignElementMapping"
				quidu      	"3B1D52F7033C"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 4"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$117"
				quid       	"3B1D5309028F"
				supplier   	"Logical View::BioAssayData::Transformation"
				quidu      	"3AC75A51038E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Mapping"
			quid       	"3B1D530B0345"
			documentation 	"The collection of mappings for the QuantitationTypes."
			roles      	(list role_list
			    (object Role "quantitationTypeMapping"
				quid       	"3B1D530C0256"
				documentation 	"rank: 3"
				label      	"quantitationTypeMapping"
				supplier   	"Logical View::BioAssayData::QuantitationTypeMapping"
				quidu      	"3B1D52E8011E"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$118"
				quid       	"3B1D530C0260"
				supplier   	"Logical View::BioAssayData::Transformation"
				quidu      	"3AC75A51038E"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "DataValues"
			quid       	"3B3B869A00B8"
			documentation 	"The data values of the BioAssayData."
			roles      	(list role_list
			    (object Role "bioDataValues"
				quid       	"3B3B869B00C3"
				label      	"bioDataValues"
				supplier   	"Logical View::BioAssayData::BioDataValues"
				quidu      	"3B54E99B02E9"
				client_cardinality 	(value cardinality "0..1")
				Constraints 	"rank: 5"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$119"
				quid       	"3B3B869B00E1"
				supplier   	"Logical View::BioAssayData::BioAssayData"
				quidu      	"3AC75A1C000D"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Target"
			quid       	"3B6C819501ED"
			documentation 	"The DerivedBioAssay that is produced by the sources of the BioAssayMap."
			roles      	(list role_list
			    (object Role "bioAssayMapTarget"
				quid       	"3B6C81970023"
				label      	"bioAssayMapTarget"
				supplier   	"Logical View::BioAssay::DerivedBioAssay"
				quidu      	"3ADC7A350367"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 1"
				Containment 	"By Reference"
				is_navigable 	TRUE)
			    (object Role "derivedBioAssayMap"
				quid       	"3B6C81970041"
				label      	"derivedBioAssayMap"
				supplier   	"Logical View::BioAssayData::BioAssayMap"
				quidu      	"3B1D3C8D0237"
				client_cardinality 	(value cardinality "0..n")
				Constraints 	"rank: 3"
				Containment 	"By Reference"
				is_navigable 	TRUE)))
		    (object Association "DataType"
			quid       	"3B71BBA301A0"
			documentation 	"The specific type for the quantitations.  From a controlled vocabulary of {float, int, boolean, etc.}"
			roles      	(list role_list
			    (object Role "dataType"
				quid       	"3B71BBA602BC"
				label      	"dataType"
				supplier   	"Logical View::Description::OntologyEntry"
				quidu      	"3B6B2D3A025D"
				client_cardinality 	(value cardinality "1")
				Constraints 	"rank: 3"
				Containment 	"By Value"
				is_navigable 	TRUE)
			    (object Role "$UNNAMED$120"
				quid       	"3B71BBA60317"
				supplier   	"Logical View::QuantitationType::QuantitationType"
				quidu      	"3AC77A4C0047"
				client_cardinality 	(value cardinality "1")
				is_aggregate 	TRUE)))
		    (object Association "Scale"
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