<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE BioMaterial_package SYSTEM "MAGE-ML.dtd" >
<BioMaterial_package>
  <BioMaterial_assnlist>
    <BioSource identifier="BioSource:1" name="Human breast tumour">
      <Characteristics_assnlist>
        <OntologyEntry category="species" value="Homo sapiens"/>
        <OntologyEntry category="tissue" value="breast"/>
        <OntologyEntry category="disease state" value="tumor"/>
      </Characteristics_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="organism part" value="breast"/>
      </MaterialType_assn>
      <SourceContact_assnreflist>
        <Person_ref identifier="T_Yeatman"/>
      </SourceContact_assnreflist>
    </BioSource>
    <BioSample identifier="BioSample:1" name="Human breast tumour">
      <AuditTrail_assnlist>
        <Audit action="creation" date="2001-12-7">
          <Performer_assnref>
            <Person_ref identifier="H_Parkinson"/>
          </Performer_assnref>
        </Audit>
      </AuditTrail_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="tissue sample" value="biopsy"/>
      </MaterialType_assn>
      <Treatments_assnlist>
        <Treatment identifier="t">
          <ProtocolApplications_assnlist>
            <ProtocolApplication activityDate="2001-06-08">
              <Performers_assnreflist>
                <Person_ref identifier="I-Yang" name="I-Yang"/>
              </Performers_assnreflist>
              <Protocol_assnref>
                <Protocol_ref identifier="M005.1" name="M005.1"/>
              </Protocol_assnref>
            </ProtocolApplication>
          </ProtocolApplications_assnlist>
          <Action_assn>
            <OntologyEntry category="protocol-name" value="M005.1"/>
          </Action_assn>
          <SourceBioMaterialMeasurements_assnlist>
            <BioMaterialMeasurement>
              <BioMaterial_assnref>
                <BioSource_ref identifier="BioSource:1"/>
              </BioMaterial_assnref>
              <Measurement_assn>
                <Measurement kindCV="mass" type="absolute" value="15">
                  <Unit_assn>
                    <MassUnit unitName="microgram" unitNameCV="ug"/>
                  </Unit_assn>
                </Measurement>
              </Measurement_assn>
            </BioMaterialMeasurement>
          </SourceBioMaterialMeasurements_assnlist>
        </Treatment>
      </Treatments_assnlist>
      <Type_assn>
        <OntologyEntry category="NucleicAcidType" value="TotalRNA"/>
      </Type_assn>
    </BioSample>
    <LabeledExtract identifier="T3518C">
      <AuditTrail_assnlist>
        <Audit action="creation" date="2001-07-27"/>
      </AuditTrail_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="LabelledNucleicAcid" value="RNA"/>
      </MaterialType_assn>
      <Treatments_assnlist>
        <Treatment identifier="Labelling">
          <Descriptions_assnlist>
            <Description text="Primer:random hexamer, nucleic acid AminoAlyl"/>
          </Descriptions_assnlist>
          <ProtocolApplications_assnlist>
            <ProtocolApplication activityDate="2001-07-26">
              <Protocol_assnref>
                <Protocol_ref identifier="TIGRLabellingProtcol" name="M0005.1"/>
              </Protocol_assnref>
            </ProtocolApplication>
          </ProtocolApplications_assnlist>
          <Action_assn>
            <OntologyEntry category="TreatmentType" value="Labelling"/>
          </Action_assn>
          <SourceBioMaterialMeasurements_assnlist>
            <BioMaterialMeasurement>
              <BioMaterial_assnref>
                <BioSample_ref identifier="BioSample:1"/>
              </BioMaterial_assnref>
              <Measurement_assn>
                <Measurement value="15">
                  <Unit_assn>
                    <MassUnit unitName="RNAlabelled" unitNameCV="ug"/>
                  </Unit_assn>
                </Measurement>
              </Measurement_assn>
            </BioMaterialMeasurement>
          </SourceBioMaterialMeasurements_assnlist>
        </Treatment>
      </Treatments_assnlist>
      <Labels_assnreflist>
        <Compound_ref identifier="Cy5"/>
      </Labels_assnreflist>
    </LabeledExtract>
    <BioSource identifier="BioSource:2">
      <Characteristics_assnlist>
        <OntologyEntry category="OrganismPart" value="brain"/>
      </Characteristics_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="CellLineName" value="U118MG"/>
      </MaterialType_assn>
      <SourceContact_assnreflist>
        <Person_ref identifier="I_Yang"/>
      </SourceContact_assnreflist>
    </BioSource>
    <BioSource identifier="BioSource:3">
      <Characteristics_assnlist>
        <OntologyEntry category="OrganismPart" value="brain"/>
      </Characteristics_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="CellLineName" value="H4"/>
      </MaterialType_assn>
      <SourceContact_assnreflist>
        <Person_ref identifier="I_Yang"/>
      </SourceContact_assnreflist>
    </BioSource>
    <BioSample identifier="BioSample:2" name="PooledCellLineRef">
      <AuditTrail_assnlist>
        <Audit action="creation" date="2001-07-22">
          <Performer_assnref>
            <Person_ref identifier="R_Irby"/>
          </Performer_assnref>
        </Audit>
      </AuditTrail_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="PooledSample" value="reference sample"/>
      </MaterialType_assn>
      <Treatments_assnlist>
        <Treatment identifier="Treatment:mix">
          <ProtocolApplications_assnlist>
            <ProtocolApplication activityDate="2001-07-22">
              <Protocol_assnref>
                <Protocol_ref identifier="Protocol:1" name="mix RNA samples"/>
              </Protocol_assnref>
            </ProtocolApplication>
          </ProtocolApplications_assnlist>
          <Action_assn>
            <OntologyEntry category="pool" value="combine RNA samples"/>
          </Action_assn>
          <SourceBioMaterialMeasurements_assnlist>
            <BioMaterialMeasurement>
              <BioMaterial_assnref>
                <BioSource_ref identifier="BioSource:2"/>
              </BioMaterial_assnref>
              <Measurement_assn>
                <Measurement kindCV="quantity" type="absolute" value="50%"/>
              </Measurement_assn>
            </BioMaterialMeasurement>
            <BioMaterialMeasurement>
              <BioMaterial_assnref>
                <BioSource_ref identifier="BioSource:3"/>
              </BioMaterial_assnref>
              <Measurement_assn>
                <Measurement kindCV="quantity" type="absolute" value="50%"/>
              </Measurement_assn>
            </BioMaterialMeasurement>
          </SourceBioMaterialMeasurements_assnlist>
        </Treatment>
      </Treatments_assnlist>
      <Type_assn>
        <OntologyEntry category="NucleicAcidType" value="TotalRNA"/>
      </Type_assn>
    </BioSample>
    <LabeledExtract identifier="RefRNA">
      <AuditTrail_assnlist>
        <Audit action="creation" date="2001-07-26"/>
      </AuditTrail_assnlist>
      <MaterialType_assn>
        <OntologyEntry category="LabeledRNA" value="RNA"/>
      </MaterialType_assn>
      <Treatments_assnlist>
        <Treatment identifier="Labelling">
          <Descriptions_assnlist>
            <Description text="Primer:random hexamer, nucleic acid AminoAlyl"/>
          </Descriptions_assnlist>
          <ProtocolApplications_assnlist>
            <ProtocolApplication activityDate="2001-07-27">
              <Protocol_assnref>
                <Protocol_ref identifier="TIGRLabellingProtocol" name="M0005.1"/>
              </Protocol_assnref>
            </ProtocolApplication>
          </ProtocolApplications_assnlist>
          <Action_assn>
            <OntologyEntry category="TreatmentType" value="Labelling"/>
          </Action_assn>
          <SourceBioMaterialMeasurements_assnlist>
            <BioMaterialMeasurement>
              <BioMaterial_assnref>
                <BioSample_ref identifier="BioSample:2"/>
              </BioMaterial_assnref>
              <Measurement_assn>
                <Measurement value="7.5">
                  <Unit_assn>
                    <MassUnit unitName="RefRNAlabelled" unitNameCV="ug"/>
                  </Unit_assn>
                </Measurement>
              </Measurement_assn>
            </BioMaterialMeasurement>
            <BioMaterialMeasurement>
              <BioMaterial_assnref>
                <BioSample_ref identifier="BioSample:3"/>
              </BioMaterial_assnref>
              <Measurement_assn>
                <Measurement value="7.5">
                  <Unit_assn>
                    <MassUnit unitName="RefRNAlabelled" unitNameCV="ug"/>
                  </Unit_assn>
                </Measurement>
              </Measurement_assn>
            </BioMaterialMeasurement>
          </SourceBioMaterialMeasurements_assnlist>
        </Treatment>
      </Treatments_assnlist>
      <Labels_assnreflist>
        <Compound_ref identifier="Cy3"/>
      </Labels_assnreflist>
    </LabeledExtract>
  </BioMaterial_assnlist>
</BioMaterial_package>
