Module replicating part of OMG specification SNP (Single Nucleotide Polymorphism).
Set of reference sequences (Reference_genomic_landmarks) with an algorithm to define the genome and its constituents.
An accessioned genomic sequence which can be unambiguously assigned to a location in an assembly based on information
in public databases.
The DNA sequence of a Genomic_variation as it appears in the public database.
Taxonomic unit. The UID is typically a species TaxID from the Taxonomy Database (http://www.ncbi.nih.gov/
Taxonomy/)
Rank (taxonomic category) of the taxon in the hierarchy. Typically 'species' or 'family'.
Scientific name, e.g. Homo sapiens.
A map containing the order and non-metric distance between genetic markers for identifiable sequence features. Unit:
centiMorgan.
Map of cytogenetic bands describing their relative order.
A DNA oligonucleotide used for detection and assay of Genomic_variations in Variation_assays. Synonym: primer
Cross reference between two Identifiables in different databases.
The remote database name or abbreviation.
Version of the database
Field in the remote database where the UID value is found. E.g. ID or AC in EMBL. Optional
Unique identifier in the remote database.
Full URL to the cross-referenced entry
A free text of name and value pair. Note: name should be Ontology_term
Name of the annotation feature
Value of annotation feature
Region in a reference sequence that determines the start, end and strand of the transcript that is not spliced away.
Region in a reference sequence that determines the start, end and strand of the gene coding region.
A location in a cytogenetic map expressed as a band or a range of bands.
A relative location of a marker in a genetic map based on recombination.
Description of the anatomical location the molecular sample is derived from. Best expressed as a controlled vocabulary of anatomical terms.
A position in an abstract map.
A location on a secondary map that gives ordering information. That map can be a genetic or a cytogenetic map.
Location description
A non-metric map category.
Map of physical entities, e.g. clones, contigs.
Biological sequence. A sequence accessioned by a public database and associated with an accessioned taxon, a version number and a release date.
Date of creation of the object.
Date of deletion of the object.
Life Science Identifier.
Date of last modification of the object.
Name can be non unique. Display name
Indicates the alphabet of the sequence molecule e.g. 'DNA', 'RNA', 'protein'
The residue sequence string.
A map composed of one or more biological sequences.
Anything with a unique identifier.
Date of creation of the object.
Date of deletion of the object.
Life Science Identifier.
Date of last modification of the object.
Name can be non unique. Display name
Abstract class for a laboratory method or a computational protocol.
Abstract class for anything that can be placed on a sequence, i.e. can act as a sequence feature.
Abstract superclass for classes describing residue changes in gene-related sequences.
Human understandable term for the change. E.g. missense, truncation.
Date of creation of the object.
Date of deletion of the object.
Life Science Identifier.
Date of last modification of the object.
Name can be non unique. Display name
The new residue in the reference sequence.
The affected residue in the reference sequence.
Free form description of change in gene product
Human understandable term for the change. E.g. missense, truncation.
An abstract map.
Location of an individual or population in a geographic map. Locations are expressed in decimal degrees. Northern
latitudes (if north of the equator) and eastern longitudes (if east of GM) have positive values by convention.
Upper bound of a geographical location expressed in degrees from the equator.
Upper bound of a geographical location expressed in degrees from the Greenwich meridian.
Lower bound of a geographical location expressed in degrees from the equator
Lower bound of a geographical location expressed in degrees from the Greenwich meridian
Person who has edited data in the data set. Synonym: curator.
Date of the editing.
An individual identified by name who is involved with creating or disseminating publications. Possible roles are author,
editor, contributor, publisher, or applicant.
Name of the organization the person is affiliated with.
Email address
Indicator that there are more persons in the list of persons; used typically for the bibliographic reference that contains only an abbreviated author list. Last listed author should have et_al set to true.
First name
Initials of any subsequent personal names.
Full postal address
Last name.
Affiliation of a group of unidentified persons.
Subject term and vocabulary name container.
The keyword, code or subject heading value string
Name of the controlled vocabulary. E.g. Sears List of Subject
Headings (SEARS), Library of Congress Subject Headings (LCSH), or Medical Subject Headings (MeSH).